PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000564592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 180aa    MW: 20927 Da    PI: 10.6785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000564592genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM743.6e-23311822128
            NAM  22 kvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...... 109
                    kv+  +l++ ++i+e+d+++++Pw Lp  v  +e++ yfF +++ ++  g +++rat  gyWk  gk+k+++++  ++e+vg++ktL f       
  MDP0000564592   3 KVHPAPLPA-SIIPEFDVFETHPWGLPGDV--RETR-YFFYNENMNKYVGINSKRATGCGYWKPIGKKKQIVANskSNEAVGIRKTLGFCerkrrr 94 
                    666667777.78***************554..4445.5555555555579**********************98667778**********777666 PP

            NAM 110 .....kgrapkgektdWvmheyrl 128
                         +++++++++t+W+mheyrl
  MDP0000564592  95 chnhhHESTSTTTQTRWLMHEYRL 118
                    6555436777778*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.2111144IPR003441NAC domain
SuperFamilySSF1019411.57E-272144IPR003441NAC domain
PfamPF023653.9E-1123118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRKVHPAPLP ASIIPEFDVF ETHPWGLPGD VRETRYFFYN ENMNKYVGIN SKRATGCGYW  60
KPIGKKKQIV ANSKSNEAVG IRKTLGFCER KRRRCHNHHH ESTSTTTQTR WLMHEYRLLA  120
SQANPTQAFK AEVGNWVVFR IFQKKRRPTQ RISDDLGVVS QRSSNCKRNL RLMEEYICS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-12214537166NO APICAL MERISTEM PROTEIN
1ut4_B8e-12214537166NO APICAL MERISTEM PROTEIN
1ut7_A8e-12214537166NO APICAL MERISTEM PROTEIN
1ut7_B8e-12214537166NO APICAL MERISTEM PROTEIN
3swm_A8e-12214540169NAC domain-containing protein 19
3swm_B8e-12214540169NAC domain-containing protein 19
3swm_C8e-12214540169NAC domain-containing protein 19
3swm_D8e-12214540169NAC domain-containing protein 19
3swp_A8e-12214540169NAC domain-containing protein 19
3swp_B8e-12214540169NAC domain-containing protein 19
3swp_C8e-12214540169NAC domain-containing protein 19
3swp_D8e-12214540169NAC domain-containing protein 19
4dul_A8e-12214537166NAC domain-containing protein 19
4dul_B8e-12214537166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.79220.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379587.11e-135PREDICTED: NAC transcription factor NAM-1-like
TrEMBLD9ZJA61e-101D9ZJA6_MALDO; NAC domain class transcription factor
STRINGVIT_14s0068g01490.t016e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-29NAC domain containing protein 83